Location: Team Snagem Hideout

The first encounter with Team Snagem is at the beginning of the game. Wes, a member of Team Snagem, betrays the team and steals the Snag Machine from them, destroying the hideout in the process.

Location: Phenac City

In Phenac City, you are stopped by a trio of Team Snagem grunts who insist that you return the Snag Machine and challenge you. Defeat them and they will leave.

Location: Realgam Tower

Realgam Tower is a tower that was created to be Cipherbase of operations, with a Colosseum on top. While waiting in the Colosseum waiting room and defeating trainers there, you eventually face off against Gonzap, the head of Team Snagem who has been working with Cipherall along

Snagem Head Gonzap	Skarmory	Crawdaunt	Pinsir	Hariyama	Shiftry
Battle Type Items	Level 47	Level 52	Level 52	Level 53	Level 53
	Random Ability	Hyper Cutter	Hyper Cutter	Guts	Chlorophyll
	Attacks: Shadow Rush Metal Sound Air Cutter Steel Wing	Attacks: Crabhammer Strength Sludge Bomb Aerial Ace	Attacks: Submission Earthquake Cut Flail	Attacks: Brick Break Earthquake Foresight Reversal	Attacks: Giga Drain Faint Attack Shadow Ball Aerial Ace
	Hold Item: Sharp Beak	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item
	Shadow Pokémon

Location: Team Snagem Hideout

After defeating Cipher, you can return to the Team Snagem Hideout after defeating Cail in Pyrite Town. When there you will find a number of trainers and Team Snagem grunts that require defeating. This will lead you on a trip around Orre hunting for Shadow Pokémon

When you return there, you will find Gonzap again and have to defeat him

Snagem Head Gonzap	Skarmory	Crawdaunt	Armaldo	Machamp	Breloom	Granbull
Battle Type Items	Level 47	Level 64	Level 64	Level 64	Level 64	Level 64
	Random Ability	Hyper Cutter	Battle Armor	Guts	Effect Spore	Intimidate
	Attacks: Shadow Rush Metal Sound Air Cutter Steel Wing	Attacks: Hyper Beam Swords Dance Aerial Ace Brick Break	Attacks: Hyper Beam Swords Dance Ancientpower Brick Break	Attacks: Hyper Beam Bulk Up Submission Foresight	Attacks: Hyper Beam Bulk Up Sky Uppercut Iron Tail	Attacks: Hyper Beam Bulk Up Shadow Ball Brick Break
	Hold Item: Sharp Beak	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item
	Shadow Pokémon

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Snagem Head Gonzap	Gyarados	Crawdaunt	Armaldo	Machamp	Breloom	Granbull
Battle Type Items	Level 64	Level 64	Level 64	Level 64	Level 64	Level 64
	Intimidate	Hyper Cutter	Battle Armor	Guts	Effect Spore	Intimidate
	Attacks: Hyper Beam Dragon Dance Earthquake Roar	Attacks: Hyper Beam Swords Dance Aerial Ace Brick Break	Attacks: Hyper Beam Swords Dance Ancientpower Brick Break	Attacks: Hyper Beam Bulk Up Submission Foresight	Attacks: Hyper Beam Bulk Up Sky Uppercut Iron Tail	Attacks: Hyper Beam Bulk Up Shadow Ball Brick Break
	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item	Hold Item: No Item

He will then run off and you will only see Team Snagem grunts in the hideout.